my_legumes

XP accessions for the Auxin Response Factor gene family in the Legume
Legume taxonomy (NCBI RefSeq database, as of SEP 2018).

datasets

A pipeline with high specificity and sensitivity in extracting
proteins from the RefSeq database (National Center for Biotechnology
Information). Manual identification of gene families is highly
time-consuming and laborious, requiring an iterative process of manual and
computational analysis to identify members of a given family. The pipelines
implements an automatic approach for the identification of gene families
based on the conserved domains that specifically define that family. See
Die et al. (2018) <doi:10.1101/436659> for more information and examples.

Jose V. Die

geneHummus

A Pipeline to Define Gene Families in Legumes and Beyond

Moamen M. Elmassry

Kimberly H. LeBlanc

Olaitan I. Awe

Allissa Dillman

Ben Busby

my_legumes function

a list of length 10 with 563 elements.<ul>
<li>1. chickpea</li>
<li>2. medicago</li>
<li>3. soybean</li>
<li>4. arachis_duranensis</li>
<li>5. arachis_ipaensis</li>
<li>6. cajanus</li>
<li>7. vigna_angulata</li>
<li>8. vigna_radiata</li>
<li>9. phaseolus</li>
<li>10. lupinus</li>
</ul>

Format

ARF proteins per legume specie — my_legumes

ARF proteins per legume specie

my_legumes: ARF proteins per legume specie

Description

Usage

Arguments

Format