load.genesets

 file name of customzied gene sets in MSigDB format. <a href="http://www.broadinstitute.org/gsea/msigdb/">http://www.broadinstitute.org/gsea/msigdb/</a> 

file


Load customized gene sets into work space. Pre-packaged genesets can also be used 
goslim.human.all 
goslim.human.BP 
goslim.human.CC 
goslim.human.MF 
goslim.mouse.all 
goslim.mouse.BP 
goslim.mouse.CC 
goslim.mouse.MF 
goslim.rat.all 
goslim.rat.BP 
goslim.rat.CC 
goslim.rat.MF 
goslim.yeast.all 
goslim.yeast.BP 
goslim.yeast.CC 
goslim.yeast.MF 
kegg2.5.generic 


"geneListPie" package is for mapping a gene list to
function categories defined in GOSlim or Kegg. The results can
be plotted as a pie chart to provide a quick view of the genes
distribution of the gene list among the function categories.
The gene list must contain a list of gene symbols. The package
contains a set of pre-processed gene sets obtained from Gene
Ontology and MSigDB including human, mouse, rat and yeast. To
provide a high level concise view, only GO slim and kegg are
provided. The gene sets are regulared updated. User can also
use customized gene sets. User can use the R Pie() or Pie3D()
function for plotting the pie chart. Users can also choose to
output the gene function mapping results and use external
software such as Excel(R) for ploting.

load.genesets: Load customized gene sets into work space

Description

Usage

Arguments

Value