geneNR (version 2.0.1)

geneSNPcustom: Identifies Candidate Genes based on identified Single Nucleotide Ploymorphisms (SNPs) from Genome Wide Association Stuides (GWAS) Analysis

Description

Identifies Candidate Genes based on identified Single Nucleotide Ploymorphisms (SNPs) from Genome Wide Association Stuides (GWAS) Analysis

Usage

geneSNPcustom(data_file, crop = "wheat")

Value

A data frame containing traits, SNP, gene_id, gene_size, and gene_type.

Arguments

data_file

The input data in .csv format. (sample_data_wheat_custom for demo purpose)

crop

Either "wheat" or "rice". (default: wheat)

Examples

load(system.file("extdata", "precomputed_sample_results_custom.rda", package = "geneNR"))
message(sample_results)
# \donttest{
result <- geneSNPcustom("sample_data_wheat_custom", crop = "wheat")
# }