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geneNetBP (version 1.0.0)

Belief Propagation in Genotype-Phenotype Networks

Description

Belief propagation methods in genotype-phenotype networks (Conditional Gaussian Bayesian Networks) to propagate phenotypic evidence through the network.

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Version

Install

install.packages('geneNetBP')

Monthly Downloads

6

Version

1.0.0

License

GPL-2

Maintainer

Janhavi Moharil

Last Published

March 17th, 2016

Functions in geneNetBP (1.0.0)

mouse

Mus Musculus Kidney eQTL data from Hageman et. al. (2011)
absorb.gnbp

Absorb evidence and infer a genotype-phenotype network
yeast

Saccharomyces Cerevisiae eQTL data from Kruglak et. al. (2005)
geneNetBP-package

Belief Propagation in Genotype-Phenotype Networks
gen.evidence

Generate a sequence of evidence for a continuous node in a conditional gaussian bayesian network.
toy

Toy example dataset
plot.gnbp

Plot a Genotype-Phenotype Network
fit.gnbp

Fit a Conditional Gaussian Bayesian Network to QTL data