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genekitr (version 1.2.8)

simGO: Simplify GO enrichment result

Description

The Gene Ontology (GO) is a major bioinformatics initiative to unify the representation of gene and gene product attributes across all species.

Usage

simGO(
  enrich_df,
  sim_method = c("Resnik", "Lin", "Rel", "Jiang", "Wang"),
  org = NULL,
  ont = NULL
)

Value

A `data.frame` contains simplified GO terms.

Arguments

enrich_df

GO enrichment analysis of `genORA()` result.

sim_method

Method of calculating the similarity between nodes, one of one of "Resnik", "Lin", "Rel", "Jiang" , "Wang" methods.

org

Organism name from `biocOrg_name`.

ont

One of "bp", "mf", and "cc".