geneplotter v1.50.0

Graphics related functions for Bioconductor

Functions for plotting genomic data

Name	Description
multiecdf	Multiple empirical cumulative distribution functions (ecdf) and densities
cScale	A function for mapping chromosome length to a number of points.
cPlot	A plotting function for chromosomes.
alongChrom	A function for plotting expression data from an ExpressionSet for a given chromosome.
groupedHeatmap	Heatmap of a matrix with grouped rows and columns
imageMap-methods	Write an HTML IMG tag together with a MAP image map.
amplicon.plot	Create an amplicon plot
GetColor	A function to get the Red-Blue color scheme used by dChip
expressionSet133a	A small dataset for testing
Makesense	Produce Smoothed Sense/Anti-sense For All Chromosomes
make.chromOrd	Make a chromOrd object
openHtmlPage	Open and close an HTML file for writing.
plotChr	Plot Smoothed Sense/Anti-sense of Specified Chromosomes
plotExpressionGraph	A function to plot a graph colored by expression data
cColor	A function for marking specific probes on a cPlot.
savepng	Save the contents of the current graphics device to a file
histStack	Stacked histogram
plotMA-methods	Generate an MA plot
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depends	annotate , base (>= 2.10) , Biobase , BiocGenerics , lattice , methods , R (>= 2.10)
imports	AnnotationDbi , graphics , grDevices , grid , RColorBrewer , stats , utils
suggests	fibroEset , hgu133a , hgu133a.db , hgu95av2 , hgu95av2.db , hu6800 , hu6800.db , Rgraphviz
Contributors	Biocore, R. Gentleman