geneplotter v1.50.0
Graphics related functions for Bioconductor
Functions for plotting genomic data
Functions in geneplotter
Name | Description | |
multiecdf | Multiple empirical cumulative distribution functions (ecdf) and densities | |
cScale | A function for mapping chromosome length to a number of points. | |
cPlot | A plotting function for chromosomes. | |
alongChrom | A function for plotting expression data from an ExpressionSet for a given chromosome. | |
groupedHeatmap | Heatmap of a matrix with grouped rows and columns | |
imageMap-methods | Write an HTML IMG tag together with a MAP image map. | |
amplicon.plot | Create an amplicon plot | |
GetColor | A function to get the Red-Blue color scheme used by dChip | |
expressionSet133a | A small dataset for testing | |
Makesense | Produce Smoothed Sense/Anti-sense For All Chromosomes | |
make.chromOrd | Make a chromOrd object | |
openHtmlPage | Open and close an HTML file for writing. | |
plotChr | Plot Smoothed Sense/Anti-sense of Specified Chromosomes | |
plotExpressionGraph | A function to plot a graph colored by expression data | |
cColor | A function for marking specific probes on a cPlot. | |
savepng | Save the contents of the current graphics device to a file | |
histStack | Stacked histogram | |
plotMA-methods | Generate an MA plot | |
No Results! |
Last year downloads
Details
License | Artistic-2.0 |
biocViews | Visualization |
LazyLoad | yes |
depends | annotate , base (>= 2.10) , Biobase , BiocGenerics , lattice , methods , R (>= 2.10) |
imports | AnnotationDbi , graphics , grDevices , grid , RColorBrewer , stats , utils |
suggests | fibroEset , hgu133a , hgu133a.db , hgu95av2 , hgu95av2.db , hu6800 , hu6800.db , Rgraphviz |
Contributors | Biocore, R. Gentleman |
Include our badge in your README
[](http://www.rdocumentation.org/packages/geneplotter)