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genepop (version 1.2.14)

Population Genetic Data Analysis Using Genepop

Description

Makes the Genepop software available in R. This software implements a mixture of traditional population genetic methods and some more focused developments: it computes exact tests for Hardy-Weinberg equilibrium, for population differentiation and for genotypic disequilibrium among pairs of loci; it computes estimates of F-statistics, null allele frequencies, allele size-based statistics for microsatellites, etc.; and it performs analyses of isolation by distance from pairwise comparisons of individuals or population samples.

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Version

Install

install.packages('genepop')

Monthly Downloads

692

Version

1.2.14

License

CeCILL-2

Maintainer

Franois Rousset

Last Published

January 23rd, 2026

Functions in genepop (1.2.14)

genepop-package

Population genetic analyses using the Genepop software
basic_info

Allele and genotype frequencies
Linkage

Tables and exact test for genotypic linkage disequilibrium
clean_workdir

Removing files created by Genepop
GUI

Call an experimental GUI for Genepop
Contingency-test

Exact test on a single contingency table
IBD

Isolation by distance
Fst

Fst (or rho_ST) estimation
Differentiation

Tests of genic and genotypic differentiation
Hardy-Weinberg

Tests of Hardy-Weinberg genotypic proportions
Nm_private

Private allele method
setRandomSeed

Set random generator seed (except for Mantel test)
conversion

File conversions
setMantelSeed

Set random generator seed for Mantel test
manipulation

Various data manipulation utilities
genedivFis

Gene diversities and Fis (or rho_IS)
nulls

Estimation of allele frequencies under genotyping failure.
genepop-internals

Internal genepop Functions
set_restriction

Programming utilities
genepopExample

Copy an example file from the Genepop package distribution