geneset (version 0.2.7)

getHgDisease: Get HgDisease geneset and geneset_name Human disease gene sets from Disease Ontology (DO),DisGeNET, Network of Cancer Gene (NCG) version 6 and v7, and covid19-specific. Geneset is a data.frame of 2 columns with term id and gene id; Geneset_name is a data.frame of 2 columns with term id and term description

Description

Get HgDisease geneset and geneset_name Human disease gene sets from Disease Ontology (DO),DisGeNET, Network of Cancer Gene (NCG) version 6 and v7, and covid19-specific. Geneset is a data.frame of 2 columns with term id and gene id; Geneset_name is a data.frame of 2 columns with term id and term description

Usage

getHgDisease(
  source = c("do", "disgenet", "ncg_v7", "ncg_v6", "covid19"),
  download.method = NULL,
  data_dir = NULL
)

Value

A list.

Arguments

source

Choose from 'do','ncg_v7','ncg_v6','disgenet','covid19'.

download.method

"auto" (as default if NULL), "wininet" (for windows)

data_dir

data saving location, default is the package data directory

Examples

# \donttest{
x = getHgDisease(source = "do", data_dir = tempdir())
# }