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geno2proteo (version 0.0.6)

Finding the DNA and Protein Sequences of Any Genomic or Proteomic Loci

Description

Using the DNA sequence and gene annotation files provided in 'ENSEMBL' , the functions implemented in the package try to find the DNA sequences and protein sequences of any given genomic loci, and to find the genomic coordinates and protein sequences of any given protein locations, which are the frequent tasks in the analysis of genomic and proteomic data.

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Version

Install

install.packages('geno2proteo')

Monthly Downloads

191

Version

0.0.6

License

Artistic-2.0

Maintainer

Yaoyong Li

Last Published

June 13th, 2022

Functions in geno2proteo (0.0.6)

proteinLocsToProteinSeq

Obtaining the amino acid sequences of a list of protein sections
genomicLocsToWholeDNASequence

Obtaining the DNA sequences of a list of genomic loci
geno2proteo-package

geno2proteo
generatingCDSaaFile

Generating a file containing the DNA and AA sequences of all the protein coding regions (CDSs) in a genome
genomicLocsToProteinSequence

Obtaining the protein sequences and DNA sequences of the coding regions within a list of loci in genome
proteinLocsToGenomic

Obtaining the genomic coordinates for a list of protein sections