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genoCN (version 1.24.0)
genotyping and copy number study tools
Description
Simultaneous identification of copy number states and genotype calls for regions of either copy number variations or copy number aberrations
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Version
Version
1.24.0
1.22.0
1.20.0
1.18.0
Version
1.24.0
License
GPL (>=2)
Maintainer
Wei Sun
Last Published
February 15th, 2017
Functions in genoCN (1.24.0)
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init.Para.CNA
Initial parameters for the HMM
snpData
Simulated LRR and BAF data for 17,348 SNPs on chromosome 22.
genoCNA
Copy Number Aberration
code.genotype
code bi-allele genotype to numerical value
snpInfo
Information of 17,348 SNPs on chromosome 22.
genoCNV
Copy Number Variation
init.Para.CNV
Initial parameters for the HMM of genoCNV
plotCN
plot LRR, BAF, and the copy number estimates