Learn R Programming

genoPlotR (version 0.8.11)

Plot Publication-Grade Gene and Genome Maps

Description

Draws gene or genome maps and comparisons between these, in a publication-grade manner. Starting from simple, common files, it will draw postscript or PDF files that can be sent as such to journals.

Copy Link

Version

Install

install.packages('genoPlotR')

Monthly Downloads

509

Version

0.8.11

License

GPL (>= 2)

Maintainer

Lionel Guy

Last Published

January 7th, 2021

Functions in genoPlotR (0.8.11)

dna_seg

DNA segment (dna_seg) class and class functions
annotation

Annotation class and class functions
chrY_subseg

Comparisons of subsegments of the Y chromosome in human and chimp
c.dna_seg

Concatenate dna_seg objects
barto

Comparison of 4 Bartonella genomes
artemisColors

Artemis Colors
auto_annotate

Auto-annotate dna_segs
comparison

Comparison class and class functions
gene_types

Gene types
apply_color_scheme

Apply a color scheme
mauve_bbone

Mauve backbone of 4 Bartonella genomes
genoPlotR-package

genoPlotR
reverse

Reverse objects
middle

Middles of a dna_seg
human_nt

Human-readable nucleotide scale
plot_gene_map

Plot gene and genome maps
read_functions

Reading functions
seg_plot

seg_plot class and class functions
trim

Trimming data frames or more complex objects with >= 2 numeric columns
range.dna_seg

Range calculation
three_genes

Three genes data set