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genogeographer (version 0.1.19)

Methods for Analysing Forensic Ancestry Informative Markers

Description

Evaluates likelihood ratio tests for alleged ancestry. Implements the methods of Tvedebrink et al (2018) .

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Version

Install

install.packages('genogeographer')

Monthly Downloads

164

Version

0.1.19

License

GPL (>= 2)

Maintainer

Torben Tvedebrink

Last Published

September 27th, 2019

Functions in genogeographer (0.1.19)

pops_to_DB

Pre-compute the scores for a given reference database
seldin_loci

Seldin Lab markers
error_bar_plot

Plot log likelihoods of profiles with approximate confidence intervals
simulate_pops

Simulate random populations
profile_AA_x0

Function that compute the genotype probability for each population (rows in df)
profile_admixture

Compute the z-score (and more) for admixed hypotheses
random_AIMs_profile

Simulate a random AIMs profile
LR_table

Compute pairwise likelihood ratios
genogeo

Likelihood ratio tests for AIMs
genogeographer

genogeographer: Methods for analysing forensic Ancestry Informative Markers
main_alleles

AIMs markers in Precision ID Ancestry Panel (Thermo Fisher Scientific)
map_plot

Plot LTR z-scores on map
bar_colour

bar_colour
app_genogeo

Shiny application for GenoGeoGrapher
exponent_tilt

P-values from Importing Sampling using Exponential tilting
kidd_loci

Kenn Kidd Lab markers