genomeIntervals (version 1.28.0)

genomeIntervals-package: Operations on genomic intervals

Description

Tools for operation on genomic intervals.

Details

Package:

genomeIntervals

Version:

1.25.3

Date:

2015-07-15

Type:

Package

Depends:

R (>= 2.15.0), intervals (>= 0.14.0), BiocGenerics, methods

Imports:

GenomeInfoDb (>= 1.5.8)

Suggests:

License:

Artistic 2.0

BiocViews:

DataImport, Infrastructure, Genetics

LazyLoad:

yes

Index:

Genome_intervals

Class "Genome\_intervals"

Genome_intervals_stranded

Class "Genome\_intervals\_stranded"

distance_to_nearest

Distance in bases to the closest interval(s)

gen_ints

Genome Intervals examples

getGffAttribute

Pull one or more key/value pairs from gffAttributes strings

interval_overlap

Assess overlap from one set of genomic intervals to another

interval_complement

Compute the complement of a set of genomic intervals

interval_intersection

Compute the intersection of one or more sets of genomic intervals

interval_union

Compute the union of genomic intervals in one or more genomic interval matrices

parseGffAttributes

Parse out the gffAttributes column of a Genome_intervals object

readGff3

Make a Genome_intervals_stranded object from a GFF file

See Also

intervals