assay,GenoSet,ANY-method

assay<-,GenoSet,ANY,ANY-method

assayNames,GenoSet-method

assays,GenoSet-method

colData,GenoSet-method

pData,GenoSet-method

object

scalar logical, should assays be returned with dimnames? Currently always TRUE for GenoSet.

withDimnames

new value to insert in assays, a matrix-like object

value


Converting eSet API to RangedSummarizedExperiment


Load, manipulate, and plot copynumber and BAF data.
GenoSet class extends eSet by adding a "locData" slot for a
GRanges object. This object contains feature
genome location data and provides for efficient subsetting on
genome location.
Provides convenience functions for processing of copy number and
B-Allele Frequency data. Provides the class RleDataFrame to
store runs of data along the genome for multiple samples.

API: Converting eSet API to RangedSummarizedExperiment

Description

Usage

Arguments