bounds2Rle

matrix, two columns, with first and last index, like from boundingIndicesByChr

bounds

ANY, some value to be associated with each range, like segmented copy number.

values

integer, the expected length of the Rle, i.e. the number of features in the
genome/target ranges processed by boundingIndicesByChr.


Given a matrix of first/last indices, like from boundingIndicesByChr, and values for
each range, convert to a Rle.  This function takes the expected length of the Rle, n,
so that any portion of the full length not covered by a first/last range will be a
run with the value NA.  This is typical in the case where data is segmented with CBS
and some of the data to be segmented is NA.


Load, manipulate, and plot copynumber and BAF data.
GenoSet class extends eSet by adding a "locData" slot for a
GRanges object. This object contains feature
genome location data and provides for efficient subsetting on
genome location.
Provides convenience functions for processing of copy number and
B-Allele Frequency data. Provides the class RleDataFrame to
store runs of data along the genome for multiple samples.

bounds2Rle: Convert bounding indices into a Rle

Description

Usage

Arguments

Value

See Also