genoset (version 1.24.0)

chrOrder: Order chromosome names in proper genome order

Description

Chromosomes make the most sense orded by number, then by letter.

Usage

chrOrder(chr.names)

Arguments

chr.names

character, vector of unique chromosome names

Value

character vector of chromosome names in proper order

See Also

Other "genome ordering": isGenomeOrder, isGenomeOrder,GRanges-method, isGenomeOrder,GenoSet-method; toGenomeOrder, toGenomeOrder,GRanges-method, toGenomeOrder,GenoSet-method

Examples

chrOrder(c("chr5","chrX","chr3","chr7","chrY"))  #  c("chr3","chr5","chr7","chrX","chrY")