genoset-datasets

fake.lrr

fake.baf

fake.cn

fake.pData

genoset.ds

locData.gr

Fake LRR, BAF, pData and location data were generated and saved as
  fake.lrr, fake.cn, fake.baf, fake.pData and locData.rd. These were used to
  construct the objects genoset.ds, baf.ds, and cn.ds

datasets

Load, manipulate, and plot copynumber and BAF data.
GenoSet class extends eSet by adding a "locData" slot for a
GRanges object. This object contains feature
genome location data and provides for efficient subsetting on
genome location.
Provides convenience functions for processing of copy number and
B-Allele Frequency data. Provides the class RleDataFrame to
store runs of data along the genome for multiple samples.

Peter M Haverty

genoset

Provides classes similar to ExpressionSet for copy number
analysis

genoset-datasets function

<dl>
    <dt>fake.lrr</dt><dd>A matrix with some randomly generated LRR (log2ratio copynumber) data</dd> <dt>fake.cn</dt><dd>A matrix with some randomly generated LRR (log2ratio copynumber) data</dd> <dt>fake.baf</dt><dd>A matrix with some randomly generated BAF (B-Allele
      Frequency) data</dd> <dt>fake.pData</dt><dd>A data.frame of sample annotation to go with fake.lrr
      and fake.baf</dd> <dt>locData.gr</dt><dd>A GRanges object describing the genomic locations
      of the probes in fake.baf and fake.lrr</dd> <dt>genoset.ds</dt><dd>A GenoSet object created with fake.lrr as the "foo"
      element, locData.rd as the locData, and fake.pData as the phenoData</dd> </dl> 

Format

Fake data generated using rnorm and the like.

genoset-datasets: Example GenoSet, BAFSet, and CNSet objects and the data to create them.

Description

Usage

Arguments

Format

Source