genoset-defunct


The CNSet and BAFSet classes are defunct.  They only really added getter/setter methods for specific assayDataElements,
so they are now redundant with the preferred method of using the assayDataElement name as the third argument to bracket, e.g.
<code>x[i, j, "lrr"]</code>. Accordingly <code>BAFSet.to.ExpressionSets</code> is also defunct.


Load, manipulate, and plot copynumber and BAF data.
GenoSet class extends eSet by adding a "locData" slot for a
GRanges object. This object contains feature
genome location data and provides for efficient subsetting on
genome location.
Provides convenience functions for processing of copy number and
B-Allele Frequency data. Provides the class RleDataFrame to
store runs of data along the genome for multiple samples.

genoset-defunct: Defunct genoset features

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