genoset-deprecated


GenoSet is moving towards using GenomicRanges instead of RangedData. We are also getting rid of dependencies on eSet for a potential switch to an underlying SummarizedExperiment.


Load, manipulate, and plot copynumber and BAF data.
GenoSet class extends eSet by adding a "locData" slot for a
GRanges object. This object contains feature
genome location data and provides for efficient subsetting on
genome location.
Provides convenience functions for processing of copy number and
B-Allele Frequency data. Provides the class RleDataFrame to
store runs of data along the genome for multiple samples.

genoset-deprecated: Deprecated genoset features

Description

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