segs2Granges

data.frame with loc.start, loc.end, and chrom columns, like from segTable or runCBS

segs


GenoSet contains a number of functions that work on segments. Many work on a data.frame of
segments, like segTable and runCBS. This function converts one of these tables in a GRanges.
The three columns specifying the ranges become the GRanges and all other columns go into the 'mcols'
portion of the GRanges object.


Load, manipulate, and plot copynumber and BAF data.
GenoSet class extends eSet by adding a "locData" slot for a
GRanges object. This object contains feature
genome location data and provides for efficient subsetting on
genome location.
Provides convenience functions for processing of copy number and
B-Allele Frequency data. Provides the class RleDataFrame to
store runs of data along the genome for multiple samples.

segs2Granges: GRanges from segment table

Description

Usage

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See Also