genoset (version 1.24.0)

segs2RleDataFrame: CBS segments to probe matrix

Description

Given segments, make an RleDataFrame of Rle objects for each sample

Usage

segs2RleDataFrame(seg.list, locs)

Arguments

seg.list

list, list of data frames, one per sample, each is result from CBS

locs

locData from a GenoSet object

Value

RleDataFrame with nrows same as locs and one column for each sample

Details

Take table of segments from CBS, convert DataTable of Rle objects for each sample.

See Also

Other "segmented data": bounds2Rle; rangeSegMeanLength, rangeSegMeanLength,GRanges,data.frame-method, rangeSegMeanLength,GRanges,list-method; runCBS; segPairTable, segPairTable,DataFrame,DataFrame-method, segPairTable,Rle,Rle-method; segTable, segTable,DataFrame-method, segTable,Rle-method; segs2Granges; segs2Rle

Examples

data(genoset)
  seg.list = runCBS( genoset.ds[, , "lrr"], locData(genoset.ds), return.segs=TRUE )
  segs2RleDataFrame( seg.list, locData(genoset.ds) )  # Loop segs2Rle on list of data.frames in seg.list