genoset (version 1.28.2)

[,GenoSet,ANY-method: Subset a GenoSet

Description

Subset a GenoSet

Usage

## S3 method for class 'GenoSet,ANY':
[(x, i, j, k, ..., withDimnames = TRUE,
  drop = FALSE)
## S3 method for class 'GenoSet,ANY,ANY,ANY':
[(x, i, j, k) <- value

Arguments

x

GenoSet

i

character, GRanges, logical, integer

j

character, logical, integer

k

character or integer

...

additional subsetting args

withDimnames

scalar logical, put dimnames on returned assay?

drop

logical drop levels of space factor?

value

incoming data for assay "k", rows "i" and cols "j"

Examples

data(genoset,package="genoset")
  genoset.ds[1:5,2:3]  # first five probes and samples 2 and 3
  genoset.ds[ , "K"]  # Sample called K
  gr = GRanges(ranges=IRanges(start=seq(from=15e6,by=1e6,length=7),width=1,names=letters[8:14]),seqnames=rep("chr17",7))
  genoset.ds[ gr, "K" ]  # sample K and probes overlapping those in rd, which overlap specifed ranges on chr17