genoset-datasets

genoset.ds

A GenoSet object the 'baf' (B-Allele Frequency) and 'lrr' (Log-R Ratio)
assay matrices. The 'lrr' assay matrix contains DNA copy number on the
scale of tumor/ploidy and the 'baf' assay matrix contains data in the
range 0 to 1 where 0 indicates the AA genotype, 0.5 indicates the AB
genotype and 1 indicates the BB genotype.

datasets

GenoSet provides an extension of the RangedSummarizedExperiment class
    with additional API
    features. This class provides convenient and fast methods for working with
    segmented genomic data. Additionally,
    GenoSet provides the class RleDataFrame which stores runs of data along the
    genome for multiple samples and provides very fast summaries of arbitrary
    row sets (regions of the genome).

Peter M Haverty

genoset-datasets: Example GenoSet object

Description

Arguments

source