genotypeeval (version 1.2.2)

GoldDataParam: User Constructor for class

Description

User Constructor for class

Usage

GoldDataParam(titv.coding.confirmed.l = 0, titv.coding.confirmed.u = 5,
  titv.noncoding.confirmed.l = 0, titv.noncoding.confirmed.u = 5,
  titv.coding.unconfirmed.l = 0, titv.coding.unconfirmed.u = 5,
  titv.noncoding.unconfirmed.l = 0, titv.noncoding.unconfirmed.u = 5,
  percent.confirmed.limits = 0, percent.het.rare.limits = 0)

Arguments

titv.coding.confirmed.l

Lower limit of transition transversion ratio in coding confirmed

titv.coding.confirmed.u

upper limit of transition transverion ratio coding confirmed

titv.noncoding.confirmed.l

Lower limit of transition transversion ratio in noncoding confirmed

titv.noncoding.confirmed.u

upper limit of transition transverion ratio noncoding confirmed

titv.coding.unconfirmed.l

Lower limit of transition transversion ratio in coding unconfirmed

titv.coding.unconfirmed.u

upper limit of transition transverion ratio coding unconfirmed

titv.noncoding.unconfirmed.l

Lower limit of transition transversion ratio in noncoding unconfirmed

titv.noncoding.unconfirmed.u

upper limit of transition transverion ratio noncoding unconfirmed

percent.confirmed.limits

lower limit, upper limit, percent confirmed in Gold comparator

percent.het.rare.limits

lower limit, upper limit, (Percent Het in Rare, MAF < 0.01 in Gold) / Total number of Heterozygotes

Value

• Object of type GoldDataParam

Examples

gparam <- GoldDataParam(percent.confirmed=0.792, percent.het.rare = 0.93)