genpb (version 0.0.14)

findHetBind: find sites of heterozygous binding in ChIP-seq experiments

Description

find sites of heterozygous binding in ChIP-seq experiments

Usage

findHetBind(v, qm, locs, m = 4, seqn = "chr17")

Arguments

v

pileup array, seq element of applyPileups

qm

quality matrix, qual element of applyPileups

locs

numeric vector of genomic coordinates of locations in v

m

minimum number of calls for two distinct nucleotides required to declare heterozygous binding

seqn

chromosome name

Value

• a GRanges instance with base-specific metadata and quality summaries in elementMetadata

Details

used in getPupChunk

Examples

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