genpb (version 0.0.14)

getPupChunk: operate on a chunk of a pileup derived from a collection of BAM files

Description

operate on a chunk of a pileup derived from a collection of BAM files

Usage

getPupChunk(fnames = dir(pattern = "bam$"), chr, start, end, ncores = 0)

Arguments

fnames

names of BAM files to be analyzed

chr

chromosome name

start

coordinate of first base to analyze

end

coordinate of last base to analyze

ncores

if non-zero, will be used to set mc.cores for parallel package mclapply usage

Value

• GRanges instance

Details

currently runs findHetBind through the chunk to get all locations of heterozygous binding -- some of its parameters need to be propagated up to this interface

Examples

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