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geomorph (version 1.1-1)

digit.fixed: Digitize fixed 3D landmarks only.

Description

A function to digitize only fixed landmarks.

Usage

digit.fixed(specimen, fixed, index = FALSE)

Arguments

specimen
Name of matrix containing three-dimensional coordinates of a surface scan
fixed
numeric: the number of fixed template landmarks
index
logical: whether selected landmark addresses should be returned

Details

Function to digitize landmarks on 3D point clouds. "n" Landmark points are selected by user. No template is used to select surface sliding semi landmarks. Select points to be digitized, using the RIGHT mouse button. The LEFT mouse button is used to ROTATE mesh, and the mouse SCROLLER is used to zoom in and out. When selection of n landmarks is completed, an ".nts" file is created in working directory using the specimen name, adding "fixedlmcoords.nts" as a suffix. NOTE: To ensure a strong match between the scan and the template, it is recommended that a reasonable number of fixed points be used. Digitizing{ Digitizing using buildtemplate is interactive between landmark selection using a mouse (see below for instructions), and the R console. Once a point is selected, the user is asked if the system should keep or discard the selection #'(y/n). If "y", the user is asked to continue to select the next landmark.If "n" the removes the last chosen landmark, and the user is askesd to select it again. This can be repeated until the user is comfortable with the landmark chosen. To digitize with a standard 3-button (PC) buildtemplate uses:
  1. the RIGHT mouse button (primary) to select points to be digitized First,
  2. the LEFT mouse button (secondary) is used to rotate mesh,
  3. the mouse SCROLLER (third/middle) is used to zoom in and out.
Note: Digitizing functions on MACINTOSH computers using a standard 3-button mice works as specified. Macs using platform specific single button mice:
  1. press button to rotate 3D mesh,
  2. press button while pressing CONTROL key to select points to be digitized,
  3. press button while pressing OPTION key to adjust mesh perspective.
Mac mouse settings need adjustment to acquire zooming functions of the "middle/third" mouse button/scroller. Some instructions can be found at http://blog.boastr.net/. In addition, freeware providing "Middle Click" functionality is available at http://magicprefs.com/ for "magicmice" now standard on many Macintosh machines. }