ggDNAvis

ggDNAvis-package

<img src="figures/logo.png?package=ggDNAvis&version=0.3.2" style="float: right" alt="logo" width="120">
Uses 'ggplot2' to visualise either (a) a single DNA/RNA sequence split across multiple lines, (b) multiple DNA/RNA sequences, each occupying a whole line, or (c) base modifications such as DNA methylation called by modified bases models in Dorado or Guppy. Functions starting with visualise_&lt;something&gt;() are the main plotting functions, and functions starting with extract_&lt;something&gt;() are key helper functions for reading files and reformatting data. Source code is available at <a href="https://github.com/ejade42/ggDNAvis">https://github.com/ejade42/ggDNAvis</a> and a full non-expert user guide is available at <a href="https://ejade42.github.io/ggDNAvis/">https://ejade42.github.io/ggDNAvis/</a>.

internal

Uses 'ggplot2' to visualise either (a) a single DNA/RNA sequence split across multiple lines, (b) multiple DNA/RNA sequences, each occupying a whole line, or (c) base modifications such as DNA methylation called by modified bases models in Dorado or Guppy. Functions starting with visualise_<something>() are the main plotting functions, and functions starting with extract_<something>() are key helper functions for reading files and reformatting data. Source code is available at <https://github.com/ejade42/ggDNAvis> and a full non-expert user guide is available at <https://ejade42.github.io/ggDNAvis/>.

Evelyn Jade

'ggplot2'-Based Tools for Visualising DNA Sequences and
Modifications

ggDNAvis-package function

Maintainer: Evelyn Jade <a href="/link/evelynjade42%40gmail.com?package=ggDNAvis&version=0.3.2" data-mini-rdoc="ggDNAvis::evelynjade42@gmail.com">evelynjade42@gmail.com</a> (<a href="https://orcid.org/0009-0003-7761-5425">ORCID</a>) [copyright holder]

Author

<img src='figures/logo.png' style='float: right' alt='logo' width='120' />
Uses 'ggplot2' to visualise either (a) a single DNA/RNA sequence split across multiple lines, (b) multiple DNA/RNA sequences, each occupying a whole line, or (c) base modifications such as DNA methylation called by modified bases models in Dorado or Guppy. Functions starting with visualise_&lt;something&gt;() are the main plotting functions, and functions starting with extract_&lt;something&gt;() are key helper functions for reading files and reformatting data. Source code is available at <a href='https://github.com/ejade42/ggDNAvis'>https://github.com/ejade42/ggDNAvis</a> and a full non-expert user guide is available at <a href='https://ejade42.github.io/ggDNAvis/'>https://ejade42.github.io/ggDNAvis/</a>.

ggDNAvis: 'ggplot2'-Based Tools for Visualising DNA Sequences and Modifications — ggDNAvis-package

Maintainer: Evelyn Jade <a href='mailto:evelynjade42@gmail.com'>evelynjade42@gmail.com</a> (<a href='https://orcid.org/0009-0003-7761-5425'>ORCID</a>) [copyright holder]

ggDNAvis-package: ggDNAvis: 'ggplot2'-Based Tools for Visualising DNA Sequences and Modifications

Description

Arguments

Author

See Also