ggDNAvis (version 0.3.2)

rasterise_matrix: Rasterise a matrix to an x/y/layer dataframe (generic ggDNAvis helper)

Description

This function takes a matrix and rasterises it to a dataframe of x and y coordinates, such that the matrix occupies the space from (0, 0) to (1, 1) and each element of the matrix represents a rectangle with width 1/ncol(matrix) and height 1/nrow(matrix). The "layer" column of the dataframe is simply the value of each element of the matrix.

Usage

rasterise_matrix(image_matrix)

Value

dataframe. A dataframe containing x and y coordinates for the centre of a rectangle per element of the matrix, such that the whole matrix occupies the space from (0, 0) to (1, 1). Additionally contains a layer column storing the value of each element of the matrix.

Arguments

image_matrix

matrix. A matrix (or anything that can be coerced to a matrix via base::as.matrix()).

Examples

## Create numerical matrix
example_matrix <- matrix(1:16, ncol = 4, nrow = 4, byrow = TRUE)

## View
example_matrix

## Rasterise
rasterise_matrix(example_matrix)



## Create character matrix
example_matrix <- matrix(
    c("A", "B", "C", "D", "E",
      "F", "G", "H", "I", "J"),
    nrow = 2, ncol = 5, byrow = TRUE
)

## View
example_matrix

## Rasterise
rasterise_matrix(example_matrix)



## Create realistic DNA matrix
dna_matrix <- matrix(
    c(0, 0, 0, 0, 0, 0, 0, 0,
      3, 3, 2, 3, 3, 2, 4, 4,
      0, 0, 0, 0, 0, 0, 0, 0,
      4, 1, 4, 1, 0, 0, 0, 0),
    nrow = 4, ncol = 8, byrow = TRUE
)

## View
dna_matrix

## Rasterise
rasterise_matrix(dna_matrix)