reverse_complement

This function takes a string/character representing a DNA/RNA sequence and returns
the reverse complement. Either DNA (<code>A/C/G/T</code>) or RNA (<code>A/C/G/U</code>) input is accepted. 
By default, output is DNA (so <code>A</code> is reverse-complemented to <code>T</code>), but it can be set
to output RNA (so <code>A</code> is reverse-complemented to <code>U</code>).

Uses 'ggplot2' to visualise either (a) a single DNA/RNA sequence split across multiple lines, (b) multiple DNA/RNA sequences, each occupying a whole line, or (c) base modifications such as DNA methylation called by modified bases models in Dorado or Guppy. Functions starting with visualise_<something>() are the main plotting functions, and functions starting with extract_<something>() are key helper functions for reading files and reformatting data. Source code is available at <https://github.com/ejade42/ggDNAvis> and a full non-expert user guide is available at <https://ejade42.github.io/ggDNAvis/>.

Evelyn Jade

ggDNAvis

'ggplot2'-Based Tools for Visualising DNA Sequences and
Modifications

reverse_complement function

<dl><dt>sequence</dt>
<dd><code>character</code>. A DNA/RNA sequence (<code>A/C/G/T/U</code>) to be reverse-complemented. No other characters allowed. Only one sequence allowed.</dd>
<dt>output_mode</dt>
<dd><code>character</code>. Either <code>"DNA"</code> (default) or <code>"RNA"</code>, to determine whether <code>A</code> should be reverse-complemented to <code>T</code> or to <code>U</code>.</dd></dl>

Arguments

This function takes a string/character representing a DNA/RNA sequence and returns
the reverse complement. Either DNA (<code>A/C/G/T</code>) or RNA (<code>A/C/G/U</code>) input is accepted. 
By default, output is DNA (so <code>A</code> is reverse-complemented to <code>T</code>), but it can be set
to output RNA (so <code>A</code> is reverse-complemented to <code>U</code>).

Reverse complement a DNA/RNA sequence (generic ggDNAvis helper) — reverse_complement

<dl>

<dt>sequence</dt>
<dd><code>character</code>. A DNA/RNA sequence (<code>A/C/G/T/U</code>) to be reverse-complemented. No other characters allowed. Only one sequence allowed.</dd>


<dt>output_mode</dt>
<dd><code>character</code>. Either <code>"DNA"</code> (default) or <code>"RNA"</code>, to determine whether <code>A</code> should be reverse-complemented to <code>T</code> or to <code>U</code>.</dd>

</dl>

reverse_complement: Reverse complement a DNA/RNA sequence (generic `ggDNAvis` helper)

Description

Usage

Value

Arguments

Examples