ggPMX (version 0.9.3)

pmx_config: This function can be used to define the pmx configuration used in plots. e.g. Monolox/Nonmem

Description

This function can be used to define the pmx configuration used in plots. e.g. Monolox/Nonmem

Usage

pmx_config(sys = "mlx", inputs, plots, ...)

Arguments

sys

charcarter system used , monolix,nonmem,...

inputs

charcater path to the inputs settings file (yaml format)

plots

charcater path to the inputs settings file (yaml format)

...

extra arguments not used

Value

pmxConfig object

Details

To create a controller user can create a pmxConfig object using - either an input template file - or a plot template file - or both. By default the 'standing' configuration will be used.

Examples

# NOT RUN {
# *************** Create a controller using custom plot configuration ***************** ------

library(ggPMX)
theophylline <- file.path(
  system.file(package = "ggPMX"), "testdata",
  "theophylline"
)
WORK_DIR <- file.path(theophylline, "Monolix")
input_file <- file.path(theophylline, "data_pk.csv")


# create a controller with a custom plots template
ctr <-  pmx_mlx(
  config = pmx_config(
    plots=file.path( system.file(package = "ggPMX"),"examples/plots.yaml"),
    inputs = system.file(package = "ggPMX","examples/custom_inputs.yaml")
  ),
  directory = WORK_DIR,
  input = input_file,
  dv = "Y",
  dvid = "DVID",
  cats = c("SEX"),
  conts = c("WT0", "AGE0"),
  strats = "STUD"
)

## get the list of plots
ctr %>% plots
ctr %>% get_plot("custom_res_time")
ctr %>% get_plot("custom_npde_time")

# }