- ctr
pmx controller
- title
character the plot title
- dname
name of dataset to be used
- type.eta
character
type of eat can be 'mode' or 'mean'.'mode' by default
- text_color
color of the correlation text in the upper matrix
- is.shrink
logical
if TRUE add shrinkage to the plot
- shrink
pmxShrinkClass
shrinkage graphical parameter or
list
coercible into one
- point
list
geom_point graphical parameter
- is.smooth
logical
if TRUE add smoothing to lower matrix plots
- smooth
list
geom_smooth graphical parameters
- is.hline
logical
if TRUE add horizontal line to lower matrix plots
- hline
list
geom_hline graphical parameters
- is.vreference_line
logical
if TRUE add reference line to diag plots
- vreference_line
list
geom_vline graphical parameters
pmx_update parameters
- filter
expression
filter which will be applied to plotting data.
- strat.facet
formula
optional stratification parameter by facetting.
This split plot by strats(each strat in a facet)
- facets
list
facet_wrap parameters.
- strat.color
character
optional stratification parameter by grouping.
This will split the plot by group (color) of strat.
- trans
character
define the transformation to apply on x or y or both variables
- pmxgpar
a object of class pmx_gpar possibly the output of the
pmx_gpar: Shared basic graphics parameters
- labels
list
list containing plot and/or axis labels: title, subtitle, x , y
- axis.title
list
containing element_text attributes to customize
the axis title. (similar to ggplot2 axis.title theme)
- axis.text
list
containing element_text attributes to customize
the axis text (similar to ggplot2 axis.text theme)
- ranges
list
limits of x/y ranges
- is.band
logical
if TRUE add horizontal band
- band
list
horizontal band parameters. geom_hline graphical parameters.
- is.draft
logical
if TRUE add draft layer
- draft
list
draft layer parameters. geom_text graphical parameters.
- is.identity_line
logical
if TRUE add an identity line
- identity_line
list
geom_abline graphical parameters.
- scale_x_log10
logical
if TRUE use log10 scale for x axis.
- scale_y_log10
logical
if TRUE use log10 scale for y axis.
- color.scales
list
define scales parameter in case of strat.color pmx_settings
- ...
others graphics parameters passed :
eta_pairs parameters