pmx_plot_iwres_dens

<code>logical</code> if TRUE uses sim_blq as dataset for plotting instead of predictions.

sim_blq

<code>character</code> name of dataset to be used. User can create his own
dataset using <code><a rd-options="" href="/link/set_data?package=ggPMX&version=1.2.8" data-mini-rdoc="ggPMX::set_data">set_data</a></code> and pass it as dname to be plotted.

dname

<code>numeric</code> x axis limits

xlim

<code>list</code> variable denstiy graphics parameters

var_line

<code>list</code> normal denstiy graphics parameters

snd_line

<code>list</code> vertical line graphics parameterspmx_update parameters

vline

<code>expression</code> filter which will be applied to plotting data.

filter

<code>formula</code> optional stratification parameter by facetting.
This split plot by strats(each strat in a facet)

strat.facet

<code>list</code> facet_wrap parameters.

facets

<code>character</code> optional stratification parameter by grouping.
This will split the plot by group (color) of strat.

strat.color

<code>character</code> define the transformation to apply on x or y or both variables

trans

a object of class pmx_gpar possibly the output of thepmx_gpar: Shared basic graphics parameters

pmxgpar

<code>list</code> list containing plot and/or axis labels: title, subtitle, x , y

labels

<code>list</code> containing element_text attributes to customize
the axis title. (similar to ggplot2 axis.title theme)

axis.title

<code>list</code> containing element_text attributes to customize
the axis text (similar to ggplot2 axis.text theme)

axis.text

<code>list</code> limits of x/y ranges

ranges

<code>logical</code> if set to TRUE add smooth layer

is.smooth

<code>list</code> geom_smooth graphical/smoothing fun parameters

smooth

<code>logical</code> if TRUE add horizontal band

is.band

<code>list</code> horizontal band parameters. geom_hline graphical parameters.

band

<code>logical</code> if TRUE add draft layer

is.draft

<code>list</code> draft layer parameters. geom_text graphical parameters.

draft

<code>logical</code> if TRUE add an identity line

is.identity_line

<code>list</code>geom_abline graphical parameters.

identity_line

<code>logical</code> if TRUE use log10 scale for x axis.

scale_x_log10

<code>logical</code> if TRUE use log10 scale for y axis.

scale_y_log10

<code>list</code> define scales parameter in case of strat.color <code><a rd-options="" href="/link/pmx_settings?package=ggPMX&version=1.2.8" data-mini-rdoc="ggPMX::pmx_settings">pmx_settings</a></code>

color.scales

others graphics parameters passed :<ul>
<li><code><a rd-options="" href="/link/pmx_gpar?package=ggPMX&version=1.2.8" data-mini-rdoc="ggPMX::pmx_gpar">pmx_gpar</a></code> internal function to customize shared graphical parameters</li>
<li><code><a rd-options="" href="/link/pmx_dens?package=ggPMX&version=1.2.8" data-mini-rdoc="ggPMX::pmx_dens">pmx_dens</a></code> pmx density object.</li>
<li><code><a rd-options="" href="/link/pmx_update?package=ggPMX&version=1.2.8" data-mini-rdoc="ggPMX::pmx_update">pmx_update</a></code> function.</li>
</ul>pmx_dens parameters

At Novartis, we aimed at standardizing the set of diagnostic plots used for modeling
activities in order to reduce the overall effort required for generating such plots.
For this, we developed a guidance that proposes an adequate set of diagnostics and a toolbox,
called 'ggPMX' to execute them. 'ggPMX' is a toolbox that can generate all diagnostic plots at a quality sufficient
for publication and submissions using few lines of code. This package focuses on plots recommended by ISoP
<doi:10.1002/psp4.12161>. While not required, you can get/install the 'R' 'lixoftConnectors'
package in the 'Monolix' installation, as described at the following url
<https://monolix.lixoft.com/monolix-api/lixoftconnectors_installation/>.
When 'lixoftConnectors' is available, 'R' can use 'Monolix' directly to create the required
Chart Data instead of exporting it from the 'Monolix' gui.

Matthew Fidler

ggPMX

'ggplot2' Based Tool to Facilitate Diagnostic Plots for NLME
Models

pmx_plot_iwres_dens function

<code>character</code> name of dataset to be used. User can create his own
dataset using <code><a rd-options='' href='set_data'>set_data</a></code> and pass it as dname to be plotted.

<code>list</code> vertical line graphics parameters

pmx_update parameters

a object of class pmx_gpar possibly the output of the

pmx_gpar: Shared basic graphics parameters

<code>list</code> define scales parameter in case of strat.color <code><a rd-options='' href='pmx_settings'>pmx_settings</a></code>

others graphics parameters passed :<ul>
<li><code><a rd-options='' href='pmx_gpar'>pmx_gpar</a></code> internal function to customize shared graphical parameters</li>
<li><code><a rd-options='' href='pmx_dens'>pmx_dens</a></code> pmx density object.</li>
<li><code><a rd-options='' href='pmx_update'>pmx_update</a></code> function.</li>
</ul>pmx_dens parameters

pmx_plot_iwres_dens: IWRES density plot

Description

Usage

Arguments

Value