pmx_qq

This function creates a qq plot object

At Novartis, we aimed at standardizing the set of diagnostic plots used for modeling
activities in order to reduce the overall effort required for generating such plots.
For this, we developed a guidance that proposes an adequate set of diagnostics and a toolbox,
called 'ggPMX' to execute them. 'ggPMX' is a toolbox that can generate all diagnostic plots at a quality sufficient
for publication and submissions using few lines of code. This package focuses on plots recommended by ISoP
<doi:10.1002/psp4.12161>. While not required, you can get/install the 'R' 'lixoftConnectors'
package in the 'Monolix' installation, as described at the following url
<https://monolixsuite.slp-software.com/r-functions/2024R1/installation-and-initialization>.
When 'lixoftConnectors' is available, 'R' can use 'Monolix' directly to create the required
Chart Data instead of exporting it from the 'Monolix' gui.

Aleksandr Pogodaev

ggPMX

'ggplot2' Based Tool to Facilitate Diagnostic Plots for NLME
Models

pmx_qq function

<dl><dt>x</dt>
<dd><code>character</code> variable name to sample</dd>
<dt>labels</dt>
<dd>list of texts/titles used within the plot</dd>
<dt>dname</dt>
<dd>name of dataset to be used</dd>
<dt>point</dt>
<dd><code>list</code> geom_point attributes color, shape,...</dd>
<dt>xmax</dt>
<dd><code>logical</code> if FALSE do not use max(aes(x)) as limits default to TRUE</dd>
<dt>facets</dt>
<dd><code>list</code></dd>
<dt>is.reference_line</dt>
<dd><code>logical</code> if TRUE add reference line to the plot</dd>
<dt>reference_line</dt>
<dd><code>list</code> geom_line attributes. Used only for pmx_plot_eta_qq</dd>
<dt>is.shrink</dt>
<dd><code>logical</code> if TRUE add shrinkage to the plot</dd>
<dt>shrink</dt>
<dd><code>pmxShrinkClass</code> shrinkage graphical parameter or
<code>list</code> coercible into one</dd>
<dt>is.hline</dt>
<dd>logical if TRUE add horizontal line y=0 ( TRUE by default)</dd>
<dt>hline</dt>
<dd>geom hline graphical parameters</dd>
<dt>is.vline</dt>
<dd>logical if TRUE add vertical line x=0 ( TRUE by default)</dd>
<dt>vline</dt>
<dd>geom vline graphical parameters</dd>
<dt>...</dt>
<dd>others graphics arguments passed to <code>pmx_gpar</code> internal object.</dd></dl>

Arguments

This function creates a qq plot object — pmx_qq

<dl>

<dt>x</dt>
<dd><code>character</code> variable name to sample</dd>


<dt>labels</dt>
<dd>list of texts/titles used within the plot</dd>


<dt>dname</dt>
<dd>name of dataset to be used</dd>


<dt>point</dt>
<dd><code>list</code> geom_point attributes color, shape,...</dd>


<dt>xmax</dt>
<dd><code>logical</code> if FALSE do not use max(aes(x)) as limits default to TRUE</dd>


<dt>facets</dt>
<dd><code>list</code></dd>


<dt>is.reference_line</dt>
<dd><code>logical</code> if TRUE add reference line to the plot</dd>


<dt>reference_line</dt>
<dd><code>list</code> geom_line attributes. Used only for pmx_plot_eta_qq</dd>


<dt>is.shrink</dt>
<dd><code>logical</code> if TRUE add shrinkage to the plot</dd>


<dt>shrink</dt>
<dd><code>pmxShrinkClass</code> shrinkage graphical parameter or
<code>list</code> coercible into one</dd>


<dt>is.hline</dt>
<dd>logical if TRUE add horizontal line y=0 ( TRUE by default)</dd>


<dt>hline</dt>
<dd>geom hline graphical parameters</dd>


<dt>is.vline</dt>
<dd>logical if TRUE add vertical line x=0 ( TRUE by default)</dd>


<dt>vline</dt>
<dd>geom vline graphical parameters</dd>


<dt>...</dt>
<dd>others graphics arguments passed to <code>pmx_gpar</code> internal object.</dd>

</dl>

pmx_qq: This function creates a qq plot object

Description

Usage

Value

Arguments

Details