read_input

At Novartis, we aimed at standardizing the set of diagnostic plots used for modeling
activities in order to reduce the overall effort required for generating such plots.
For this, we developed a guidance that proposes an adequate set of diagnostics and a toolbox,
called 'ggPMX' to execute them. 'ggPMX' is a toolbox that can generate all diagnostic plots at a quality sufficient
for publication and submissions using few lines of code. This package focuses on plots recommended by ISoP
<doi:10.1002/psp4.12161>. While not required, you can get/install the 'R' 'lixoftConnectors'
package in the 'Monolix' installation, as described at the following url
<https://monolixsuite.slp-software.com/r-functions/2024R1/installation-and-initialization>.
When 'lixoftConnectors' is available, 'R' can use 'Monolix' directly to create the required
Chart Data instead of exporting it from the 'Monolix' gui.

Aleksandr Pogodaev

ggPMX

'ggplot2' Based Tool to Facilitate Diagnostic Plots for NLME
Models

read_input function

<dl><dt>ipath</dt>
<dd>full path of the input file</dd>
<dt>dv</dt>
<dd><code>character</code> the name of measurable variable used in the input modelling file</dd>
<dt>dvid</dt>
<dd><code>character</code> observation type parameter</dd>
<dt>cats</dt>
<dd>[Optional]<code>character</code> vector of categorical covariates</dd>
<dt>conts</dt>
<dd>[Optional]<code>character</code> vector of continuous covariates</dd>
<dt>strats</dt>
<dd>[Optional]<code>character</code> extra stratification variables</dd>
<dt>occ</dt>
<dd>[Optional]<code>character</code> inter individual occasion variables</dd>
<dt>endpoint</dt>
<dd><code>integer</code> null in case of a single endpoint otherwise the index of endpoints.</dd>
<dt>id</dt>
<dd><code>character</code> the name of identifier variable used in the input modelling file.</dd>
<dt>time</dt>
<dd><code>character</code> the name of time variable used in the input modelling file</dd></dl>

Arguments

Read Modelling input data — read_input

<dl>

<dt>ipath</dt>
<dd>full path of the input file</dd>


<dt>dv</dt>
<dd><code>character</code> the name of measurable variable used in the input modelling file</dd>


<dt>dvid</dt>
<dd><code>character</code> observation type parameter</dd>


<dt>cats</dt>
<dd>[Optional]<code>character</code> vector of categorical covariates</dd>


<dt>conts</dt>
<dd>[Optional]<code>character</code> vector of continuous covariates</dd>


<dt>strats</dt>
<dd>[Optional]<code>character</code> extra stratification variables</dd>


<dt>occ</dt>
<dd>[Optional]<code>character</code> inter individual occasion variables</dd>


<dt>endpoint</dt>
<dd><code>integer</code> null in case of a single endpoint otherwise the index of endpoints.</dd>


<dt>id</dt>
<dd><code>character</code> the name of identifier variable used in the input modelling file.</dd>


<dt>time</dt>
<dd><code>character</code> the name of time variable used in the input modelling file</dd>

</dl>

read_input: Read Modelling input data

Description

Usage

Value

Arguments