ggalign (version 1.1.0)

quad_active: Determine the Active Context of Quad-Layout

Description

• quad_active: Sets the active context to the quad_layout()/ggheatmap() itself.

• quad_anno: Sets the active context to the specified annotation stack based on the position argument.

• anno_top: A special case of quad_anno with position = "top".

• anno_left: A special case of quad_anno with position = "left".

• anno_bottom: A special case of quad_anno with position = "bottom".

• anno_right: A special case of quad_anno with position = "right".

Usage

quad_active(width = NULL, height = NULL)
quad_anno(
  position,
  size = NULL,
  free_guides = waiver(),
  initialize = NULL,
  what = waiver()
)
anno_top(
  size = NULL,
  free_guides = waiver(),
  initialize = NULL,
  what = waiver()
)
anno_left(
  size = NULL,
  free_guides = waiver(),
  initialize = NULL,
  what = waiver()
)
anno_bottom(
  size = NULL,
  free_guides = waiver(),
  initialize = NULL,
  what = waiver()
)
anno_right(
  size = NULL,
  free_guides = waiver(),
  initialize = NULL,
  what = waiver()
)

Value

An object that can be added to quad_layout()/ggheatmap().

Arguments

width, height

The relative width/height of the main plot, can be a unit object.

position

A string of "top", "left", "bottom", or "right" indicates which annotation stack should be activated.

size

A numeric value or an unit object to set the total height/width of the annotation stack.

• If position is "top" or "bottom", size sets the total height of the annotation.

• If position is "left" or "right", size sets the total width of the annotation.

free_guides

Override the guides collection behavior specified in the quad_layout()/ggheatmap() for the annotation stack.

initialize

A boolean indicating whether the annotation stack should be initialized if it is not already. By default, the annotation stack layout will attempt to initialize when the data is compatible. If set to TRUE, and the data in quad_layout()/ggheatmap() is incompatible with the annotation stack, no data will be used in the stack.

what

What should get activated in the annotation stack? A single number or string of the plot elements in the layout. If NULL, will remove any active context.

Details

By default, quad_anno() attempts to initialize the annotation stack layout using data from quad_layout()/ggheatmap(). However, in situations where you want to use different data for the annotation stack, you can set initialize = FALSE and then provide a custom stack_layout().

See Also

quad_switch()