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ggbio (version 1.20.1)

stat_mismatch: Calculate mismatch summary

Description

Calculate mismatch summary

Usage

## for GRanges
## S3 method for class 'GRanges':
stat_mismatch(data, ..., bsgenome, 
              xlab, ylab, main,
              geom = c("segment", "bar"),
              show.coverage = TRUE)
## for BamFile
## S3 method for class 'BamFile':
stat_mismatch(data, ..., bsgenome, which,
              xlab, ylab, main,
              geom = c("segment", "bar"),
              show.coverage = TRUE)

Arguments

data
A GRanges or BamFile object.
...
Extra parameters such as aes() passed to geom_rect, geom_alignment, or geom_segment.
bsgenome
BSgenome object.
which
GRanges object to subset the data.
xlab
Label for x
ylab
Label for y
main
Title for plot.
geom
The geometric object to use display the data.
show.coverage
whether to show coverage as background or not.

Value

  • A 'Layer'.