breakPointsFunc

Generates uniform and visually appealing major tick positions based on sequence length and target tick count (avoids excessively short end ticks)

internal

A function built on 'ggplot2' that visualizes pairwise 'BLAST' alignment results as chord diagrams, intuitively displaying homologous regions between query and subject sequences.

Jem Dang

ggchord

Multi-Sequence 'BLAST' Alignment Chord Diagram Visualization
Tool

breakPointsFunc function

<dl><dt>max_value</dt>
<dd>Numeric, sequence length (maximum value)</dd>
<dt>n</dt>
<dd>Integer, target number of ticks, default 5</dd>
<dt>tol</dt>
<dd>Numeric (0-1), tolerance threshold for end tick length (proportion of the median length of other ticks), default 0.5</dd></dl>

Arguments

Generate major axis tick breakpoints — breakPointsFunc

<dl>

<dt>max_value</dt>
<dd>Numeric, sequence length (maximum value)</dd>


<dt>n</dt>
<dd>Integer, target number of ticks, default 5</dd>


<dt>tol</dt>
<dd>Numeric (0-1), tolerance threshold for end tick length (proportion of the median length of other ticks), default 0.5</dd>

</dl>

breakPointsFunc: Generate major axis tick breakpoints

Description

Usage

Value

Arguments