process_gene_param

Standardizes gene parameters (e.g., offset, width) from various input formats (single value/vector/list) into a list seperated by sequence and strand

internal

A function built on 'ggplot2' that visualizes pairwise 'BLAST' alignment results as chord diagrams, intuitively displaying homologous regions between query and subject sequences.

Jem Dang

ggchord

Multi-Sequence 'BLAST' Alignment Chord Diagram Visualization
Tool

process_gene_param function

<dl><dt>param</dt>
<dd>Input parameter (can be NULL, single value, vector, list)</dd>
<dt>seqs</dt>
<dd>Character vector, list of sequence IDs</dd>
<dt>param_name</dt>
<dd>Character, name of the parameter (used in error messages)</dd>
<dt>default_value</dt>
<dd>Default value when param is NULL</dd>
<dt>is_logical</dt>
<dd>Logical, whether the parameter is logical (TRUE/FALSE), default FALSE</dd></dl>

Arguments

Process gene-related parameters — process_gene_param

<dl>

<dt>param</dt>
<dd>Input parameter (can be NULL, single value, vector, list)</dd>


<dt>seqs</dt>
<dd>Character vector, list of sequence IDs</dd>


<dt>param_name</dt>
<dd>Character, name of the parameter (used in error messages)</dd>


<dt>default_value</dt>
<dd>Default value when param is NULL</dd>


<dt>is_logical</dt>
<dd>Logical, whether the parameter is logical (TRUE/FALSE), default FALSE</dd>

</dl>

process_gene_param: Process gene-related parameters

Description

Usage

Value

Arguments