process_manual_colors

Standardizes gene color parameters in manual mode (color by gene annotation) into a vector named by gene annotation

internal

A function built on 'ggplot2' that visualizes pairwise 'BLAST' alignment results as chord diagrams, intuitively displaying homologous regions between query and subject sequences.

Jem Dang

ggchord

Multi-Sequence 'BLAST' Alignment Chord Diagram Visualization
Tool

process_manual_colors function

<dl><dt>gene_colors</dt>
<dd>Color vector (can be NULL, single value, vector, named vector with gene annotations)</dd>
<dt>unique_anno</dt>
<dd>Character vector, unique gene annotation names</dd>
<dt>gene_order</dt>
<dd>Character vector, display order of genes in the legend, default NULL (order of appearance)</dd></dl>

Arguments

Process gene color parameters in manual mode — process_manual_colors

<dl>

<dt>gene_colors</dt>
<dd>Color vector (can be NULL, single value, vector, named vector with gene annotations)</dd>


<dt>unique_anno</dt>
<dd>Character vector, unique gene annotation names</dd>


<dt>gene_order</dt>
<dd>Character vector, display order of genes in the legend, default NULL (order of appearance)</dd>

</dl>

process_manual_colors: Process gene color parameters in manual mode

Description

Usage

Value

Arguments