prepare_scales_annot

Prepares a brewer palette or viridis option for all annotations that don't have any colour scale
specified by the user. There are eight options each for brewer (categorical) and viridis (continuous) and they are selected
sequentially, going back to the beginning if there are more than eight annotations of each kind.

internal

Create correlation heatmaps with 'ggplot2' and customise them
with flexible annotation and clustering. Symmetric heatmaps can use
triangular or mixed layouts, removing redundant information or displaying
complementary information in the two halves. There is also support for
general heatmaps not displaying correlations.

Leo Dahl

ggcorrheatmap

Make Flexible 'ggplot2' Correlation Heatmaps

prepare_scales_annot function

<dl><dt>scale_order</dt>
<dd>List containing orders of scales as obtained from make_legend_order.</dd>
<dt>annot_rows_df</dt>
<dd>Data frame with annotation for rows.</dd>
<dt>annot_cols_df</dt>
<dd>Data frame with annotation for columns.</dd>
<dt>annot_rows_col</dt>
<dd>List with colour scales for rows.</dd>
<dt>annot_cols_col</dt>
<dd>List with colour scales for columns.</dd></dl>

Arguments

Prepare default colour scales for annotation. — prepare_scales_annot

<dl>

<dt>scale_order</dt>
<dd>List containing orders of scales as obtained from make_legend_order.</dd>


<dt>annot_rows_df</dt>
<dd>Data frame with annotation for rows.</dd>


<dt>annot_cols_df</dt>
<dd>Data frame with annotation for columns.</dd>


<dt>annot_rows_col</dt>
<dd>List with colour scales for rows.</dd>


<dt>annot_cols_col</dt>
<dd>List with colour scales for columns.</dd>

</dl>

prepare_scales_annot: Prepare default colour scales for annotation.

Description

Usage

Value

Arguments