theme_gene

The goal of 'ggcoverage' is to simplify the process of visualizing genome coverage. It contains functions to
load data from BAM, BigWig or BedGraph files, create genome coverage plot, add various annotations to
the coverage plot, including base and amino acid annotation, GC annotation, gene annotation, transcript annotation, ideogram annotation and peak annotation.

Yabing Song

ggcoverage

Visualize Genome Coverage with Various Annotations

theme_gene function

<dl><dt>overlap.gene.gap</dt>
<dd>The gap between gene groups.</dd>
<dt>group.num</dt>
<dd>The number of groups.</dd>
<dt>fill.color</dt>
<dd>Fill color.</dd>
<dt>x.range</dt>
<dd>X axis ranges.</dd>
<dt>margin.len</dt>
<dd>Top and bottom margin.</dd></dl>

Arguments

Theme for geom_gene. — theme_gene

<dl>

<dt>overlap.gene.gap</dt>
<dd>The gap between gene groups.</dd>


<dt>group.num</dt>
<dd>The number of groups.</dd>


<dt>fill.color</dt>
<dd>Fill color.</dd>


<dt>x.range</dt>
<dd>X axis ranges.</dd>


<dt>margin.len</dt>
<dd>Top and bottom margin.</dd>

</dl>

theme_gene: Theme for geom_gene.

Description

Usage

Value

Arguments