ggcyto (version 1.0.5)

fortify.flowFrame: Convert a flowFrame/flowSet/GatingSet to a ggplot-compatible data.table

Description

It extracts events matrices and appends the pData to it so that ggplot can use the pData for facetting.

Usage

"fortify"(model, data, ...)
"fortify"(model, data, ...)
"fortify"(model, ...)

Arguments

model

flowFrame, flowSet or GatingSet

data

not used.

...

not used.

Value

data.tabledata.tabledata.table

Examples

dataDir <- system.file("extdata",package="flowWorkspaceData")
gs <- load_gs(list.files(dataDir, pattern = "gs_manual",full = TRUE))

attr(gs, "subset") <- "CD4" #must attach subset information to GatingSet object before foritfying it
fortify(gs)

fs <- getData(gs, "CD8")
fortify(fs)#fs is a flowSet/ncdfFlowSet

fr <- fs[[1]]
fortify(fr)#fr is a flowFrame