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ggfortify (version 0.4.11)

Data Visualization Tools for Statistical Analysis Results

Description

Unified plotting tools for statistics commonly used, such as GLM, time series, PCA families, clustering and survival analysis. The package offers a single plotting interface for these analysis results and plots in a unified style using 'ggplot2'.

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Install

install.packages('ggfortify')

Monthly Downloads

25,199

Version

0.4.11

License

GPL-2

Issues

21

Pull Requests

0

Stars

529

Forks

67

Maintainer

Yuan Tang

Last Published

October 2nd, 2020

Functions in ggfortify (0.4.11)

autoplot.breakpoints

Autoplot strucchange::breakpoints
autoplot.SpatialCommon

Autoplot maps::map
autoplot.MSM.lm

Autoplot MSwM::MSM.lm
apply_facets

Apply facets to to ggplot2::ggplot
autoplot.RasterCommon

Autoplot raster::raster
as_tibble.basis

Convert a spline basis to a tibble
apply_grid

Apply grid to to ggplot2::ggplot
autoplot.aareg

Autoplot survival::aareg
autoplot.basis

Autoplot spline basis instances
autoplot.acf

Autoplot stats::acf. Note to pass `plot = FALSE` to original function to suppress standard plot output
autoplot.glmnet

Autoplot glmnet::glmnet
autoplot.forecast

Autoplot forecast::forecast
autoplot.density

Autoplot stats::density
autoplot.matrix

Plot base::matrix
autoplot.map

Autoplot maps::map
autoplot.stepfun

Plot stats::stepfun
autoplot.survfit

Autoplot survival::survfit
autoplot.ggmultiplot

Autoplot ggmultiplot instances. It returns the passed instance as it is.
autoplot.ggplot

Autoplot ggplot instances. It returns the passed instance as it is.
autoplot.silhouette

Autoplot silhouette instances
autoplot.spec

Autoplot stats::spec
autoplot.kmeans

Autoplot cluster instances
autoplot.ts

Autoplot time-series-like
autoplot.cpt

Autoplot changepoint::cpt
flatten

Flatten dataframe contains matrix
autoplot.cv.glmnet

Autoplot glmnet::cv.glmnet
autoplot.lm

Autoplot stats::lm and stats::glm
fortify.SpatialCommon

Convert sp instances to data.frame.
autoplot.list

Autoplot list
fortify.RasterCommon

Convert raster to data.frame
autoplot.performance

Autoplot ROCR::performance
autoplot.pca_common

Autoplot PCA-likes
check_names

Check data names are equal with expected
confint.acf

Calculate confidence interval for stats::acf
fortify.aareg

Convert survival::aareg to data.frame
fortify.MSM.lm

Convert MSwM::MSM.lm to data.frame
geom_factory

Factory function to control ggplot2::geom_xxx functions
autoplot.varprd

Autoplot vars::varprd
cbind_wraps

Wrapper for cbind
fortify.acf

Convert stats::acf to data.frame
fortify.dist

Convert stats::dist to data.frame
fortify.ets

Convert forecast::bats and forecast::ets to data.frame
fortify.list

Convert list to data.frame
fortify.glmnet

Convert glmnet::glmnet to data.frame
autoplot.tsmodel

Autoplot time series models (like AR, ARIMA)
fortify.matrix

Convert base::matrix to data.frame
is_derived_from

Check object is target class, or object is data.frame fortified from target.
is.univariate

Check if Validates number of ts variates
fortify.performance

Convert ROCR::performance objects to data.frame
get.dtindex.continuous

Get Date vector continue to ts index
fortify.lfda

Convert lfda::lfda or lfda::klfda or lfda::self to data.frame
fitted.ar

Calculate fitted values for stats::ar
deprecate.warning

Show deprecate warning
fortify.factanal

Convert stats::factanal to data.frame
fortify.forecast

Convert forecast::forecast to data.frame
fortify.cpt

Convert changepoint::cpt and strucchange::breakpoints to data.frame
fortify.basis

Convert spline basis instances to data.frame
fortify.tsmodel

Convert time series models (like AR, ARIMA) to data.frame
ggcpgram

Plots a cumulative periodogram
ggdistribution

Plot distribution
fortify.cv.glmnet

Convert glmnet::cv.glmnet to data.frame
fortify.kmeans

Convert cluster instances to data.frame
fortify.density

Convert stats::density to data.frame
fortify.ts

Convert time-series-like to data.frame
fortify.silhouette

Convert cluster::silhouette to data.frame
ggfortify

ggfortify
residuals.ar

Calculate residuals for stats::ar
get.layout

Calcurate layout matrix for ggmultiplot
unscale

Backtransform scale-ed object
fortify.table

Convert base::table to data.frame
print,ggmultiplot-method

Generic print function for ggmultiplot
ggfreqplot

Plot seasonal subseries of time series, generalization of stats::monthplot
fortify.survfit

Convert survival::survfit to data.frame
get.dtindex

Convert ts index to Date vector
+,ggmultiplot,ANY-method

Generic add operator for ggmultiplot
get_geom_function

Factory function to control ggplot2::geom_xxx functions
ggbiplot

Draw biplot using ggplot2.
fortify.prcomp

Convert stats::prcomp, stats::princomp to data.frame
fortify.varprd

Convert vars::varprd to data.frame
fortify.spec

Convert stats::spec to data.frame
fortify.stepfun

Convert stats::stepfun to data.frame
plot_confint

Attach confidence interval to ggplot2::ggplot
ggmultiplot-class

An S4 class to hold multiple ggplot2::ggplot instances
ggtsdiag

Plots time-series diagnostics
fortify_base

Convert base::table to data.frame
post_fortify

Post process for fortify.
post_autoplot

Post process for fortify. Based on ggplot2::qplot
plot_label

Attach label to ggplot2::ggplot
fortify_map

Convert maps::map to data.frame.
support_autoplot

Check if passed object is supported by ggplot2::autoplot
show,ggmultiplot-method

Generic show function for ggmultiplot
geom_confint

Connect observations by stairs.
infer

Infer class name
rbind_ts

Rbind original and predicted time-series-like instances as fortified data.frame
grid.draw.ggmultiplot

The implemented grid.draw method for ggmultiplot, in order to work with ggsave() properly