ggfortify v0.4.11

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by Yuan Tang View Source

Data Visualization Tools for Statistical Analysis Results

Unified plotting tools for statistics commonly used, such as GLM, time series, PCA families, clustering and survival analysis. The package offers a single plotting interface for these analysis results and plots in a unified style using 'ggplot2'.

Functions in ggfortify

Name	Description
autoplot.breakpoints	Autoplot strucchange::breakpoints
autoplot.SpatialCommon	Autoplot maps::map
autoplot.MSM.lm	Autoplot MSwM::MSM.lm
apply_facets	Apply facets to to ggplot2::ggplot
autoplot.RasterCommon	Autoplot raster::raster
as_tibble.basis	Convert a spline basis to a tibble
apply_grid	Apply grid to to ggplot2::ggplot
autoplot.aareg	Autoplot survival::aareg
autoplot.basis	Autoplot spline basis instances
autoplot.acf	Autoplot stats::acf. Note to pass `plot = FALSE` to original function to suppress standard plot output
autoplot.glmnet	Autoplot glmnet::glmnet
autoplot.forecast	Autoplot forecast::forecast
autoplot.density	Autoplot stats::density
autoplot.matrix	Plot base::matrix
autoplot.map	Autoplot maps::map
autoplot.stepfun	Plot stats::stepfun
autoplot.survfit	Autoplot survival::survfit
autoplot.ggmultiplot	Autoplot ggmultiplot instances. It returns the passed instance as it is.
autoplot.ggplot	Autoplot ggplot instances. It returns the passed instance as it is.
autoplot.silhouette	Autoplot silhouette instances
autoplot.spec	Autoplot stats::spec
autoplot.kmeans	Autoplot cluster instances
autoplot.ts	Autoplot time-series-like
autoplot.cpt	Autoplot changepoint::cpt
flatten	Flatten dataframe contains matrix
autoplot.cv.glmnet	Autoplot glmnet::cv.glmnet
autoplot.lm	Autoplot stats::lm and stats::glm
fortify.SpatialCommon	Convert sp instances to data.frame.
autoplot.list	Autoplot list
fortify.RasterCommon	Convert raster to data.frame
autoplot.performance	Autoplot ROCR::performance
autoplot.pca_common	Autoplot PCA-likes
check_names	Check data names are equal with expected
confint.acf	Calculate confidence interval for stats::acf
fortify.aareg	Convert survival::aareg to data.frame
fortify.MSM.lm	Convert MSwM::MSM.lm to data.frame
geom_factory	Factory function to control ggplot2::geom_xxx functions
autoplot.varprd	Autoplot vars::varprd
cbind_wraps	Wrapper for cbind
fortify.acf	Convert stats::acf to data.frame
fortify.dist	Convert stats::dist to data.frame
fortify.ets	Convert forecast::bats and forecast::ets to data.frame
fortify.list	Convert list to data.frame
fortify.glmnet	Convert glmnet::glmnet to data.frame
autoplot.tsmodel	Autoplot time series models (like AR, ARIMA)
fortify.matrix	Convert base::matrix to data.frame
is_derived_from	Check object is target class, or object is data.frame fortified from target.
is.univariate	Check if Validates number of ts variates
fortify.performance	Convert ROCR::performance objects to data.frame
get.dtindex.continuous	Get Date vector continue to ts index
fortify.lfda	Convert lfda::lfda or lfda::klfda or lfda::self to data.frame
fitted.ar	Calculate fitted values for stats::ar
deprecate.warning	Show deprecate warning
fortify.factanal	Convert stats::factanal to data.frame
fortify.forecast	Convert forecast::forecast to data.frame
fortify.cpt	Convert changepoint::cpt and strucchange::breakpoints to data.frame
fortify.basis	Convert spline basis instances to data.frame
fortify.tsmodel	Convert time series models (like AR, ARIMA) to data.frame
ggcpgram	Plots a cumulative periodogram
ggdistribution	Plot distribution
fortify.cv.glmnet	Convert glmnet::cv.glmnet to data.frame
fortify.kmeans	Convert cluster instances to data.frame
fortify.density	Convert stats::density to data.frame
fortify.ts	Convert time-series-like to data.frame
fortify.silhouette	Convert cluster::silhouette to data.frame
ggfortify	ggfortify
residuals.ar	Calculate residuals for stats::ar
get.layout	Calcurate layout matrix for ggmultiplot
unscale	Backtransform scale-ed object
fortify.table	Convert base::table to data.frame
print,ggmultiplot-method	Generic print function for ggmultiplot
ggfreqplot	Plot seasonal subseries of time series, generalization of stats::monthplot
fortify.survfit	Convert survival::survfit to data.frame
get.dtindex	Convert ts index to Date vector
+,ggmultiplot,ANY-method	Generic add operator for ggmultiplot
get_geom_function	Factory function to control ggplot2::geom_xxx functions
ggbiplot	Draw biplot using ggplot2.
fortify.prcomp	Convert stats::prcomp, stats::princomp to data.frame
fortify.varprd	Convert vars::varprd to data.frame
fortify.spec	Convert stats::spec to data.frame
fortify.stepfun	Convert stats::stepfun to data.frame
plot_confint	Attach confidence interval to ggplot2::ggplot
ggmultiplot-class	An S4 class to hold multiple ggplot2::ggplot instances
ggtsdiag	Plots time-series diagnostics
fortify_base	Convert base::table to data.frame
post_fortify	Post process for fortify.
post_autoplot	Post process for fortify. Based on ggplot2::qplot
plot_label	Attach label to ggplot2::ggplot
fortify_map	Convert maps::map to data.frame.
support_autoplot	Check if passed object is supported by ggplot2::autoplot
show,ggmultiplot-method	Generic show function for ggmultiplot
geom_confint	Connect observations by stairs.
infer	Infer class name
rbind_ts	Rbind original and predicted time-series-like instances as fortified data.frame
grid.draw.ggmultiplot	The implemented grid.draw method for ggmultiplot, in order to work with ggsave() properly
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Vignettes of ggfortify

Name
basics.Rmd
plot_dist.Rmd
plot_lm.Rmd
plot_map.Rmd
plot_pca.Rmd
plot_surv.Rmd
plot_ts.Rmd
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Details

Type	Package
Date	2020-10-02
URL	https://github.com/sinhrks/ggfortify
BugReports	https://github.com/sinhrks/ggfortify/issues
Encoding	UTF-8
License	GPL-2
VignetteBuilder	knitr
RoxygenNote	7.1.0
NeedsCompilation	no
Packaged	2020-10-02 15:31:30 UTC; yuan.tang
Repository	CRAN
Date/Publication	2020-10-02 15:52:06 UTC

suggests	changepoint , cluster , dlm , fGarch , forecast , ggrepel , glmnet , grDevices , KFAS , knitr , lfda , lintr , mapdata , markdown , MASS , MSwM , nlme , raster , ROCR , sp , stats , strucchange , survival , testthat , timeSeries , tseries , utils , vars , xts , zoo
imports	dplyr (>= 0.3) , grid , gridExtra , scales , stringr , tibble , tidyr
depends	ggplot2 (>= 2.0.0) , methods
Contributors	Masaaki Horikoshi, Ryan Thompson, Luciano Selzer, Dario Strbenac, Austin Dickey, Matthias Greni<c3><a9>, Kirill Voronin, Damir Pulatov