ggfortify (version 0.4.17)

autoplot.survfit: Autoplot survival::survfit

Description

Autoplot survival::survfit

Usage

# S3 method for survfit
autoplot(
  object,
  fun = NULL,
  surv.geom = "step",
  surv.colour = NULL,
  surv.size = NULL,
  surv.linetype = NULL,
  surv.alpha = NULL,
  surv.fill = NULL,
  surv.shape = NULL,
  surv.connect = TRUE,
  conf.int = TRUE,
  conf.int.colour = "#0000FF",
  conf.int.linetype = "none",
  conf.int.fill = "#000000",
  conf.int.alpha = 0.3,
  censor = TRUE,
  censor.colour = NULL,
  censor.size = 3,
  censor.alpha = NULL,
  censor.shape = "+",
  facets = FALSE,
  nrow = NULL,
  ncol = 1,
  grid = FALSE,
  strip_swap = FALSE,
  scales = "free_y",
  xlim = c(NA, NA),
  ylim = c(NA, NA),
  log = "",
  main = NULL,
  xlab = NULL,
  ylab = NULL,
  asp = NULL,
  ...
)

Value

ggplot

Arguments

object

survival::survfit instance

fun

an arbitrary function defining a transformation of the survival curve

surv.geom

geometric string for survival curve. 'step', 'line' or 'point'

surv.colour

line colour for survival curve

surv.size

point size for survival curve

surv.linetype

line type for survival curve

surv.alpha

alpha for survival curve

surv.fill

fill colour survival curve

surv.shape

point shape survival curve

surv.connect

logical frag indicates whether connects survival curve to the origin

conf.int

Logical flag indicating whether to plot confidence intervals

conf.int.colour

line colour for confidence intervals

conf.int.linetype

line type for confidence intervals

conf.int.fill

fill colour for confidence intervals

conf.int.alpha

alpha for confidence intervals

censor

Logical flag indicating whether to plot censors

censor.colour

colour for censors

censor.size

size for censors

censor.alpha

alpha for censors

censor.shape

shape for censors

facets

Logical value to specify use facets

nrow

Number of facet/subplot rows

ncol

Number of facet/subplot columns

grid

Logical flag indicating whether to draw grid

strip_swap

swap facet or grid strips

scales

Scale value passed to ggplot2

xlim

limits for x axis

ylim

limits for y axis

log

which variables to log transform ("x", "y", or "xy")

main

character vector or expression for plot title

xlab

character vector or expression for x axis label

ylab

character vector or expression for y axis label

asp

the y/x aspect ratio

...

other arguments passed to methods

Examples

if (FALSE) {
if (requireNamespace("survival", quietly = TRUE)) {
  autoplot(survfit(Surv(time, status) ~ sex, data = lung))
  autoplot(survfit(Surv(time, status) ~ sex, data = lung), facets = TRUE)
  autoplot(survfit(Surv(time, status) ~ 1, data = lung))
  autoplot(survfit(Surv(time, status) ~ sex, data=lung), conf.int = FALSE, censor = FALSE)
  autoplot(survfit(coxph(Surv(time, status) ~ sex, data = lung)))
}
}