gggenomes (version 1.0.1)

as_seqs: Compute a layout for sequence data

Description

Read sequence data of multiple genomes (contigs, chromosomes, ...) into a tidy dataframe and augment it with layout information necessary for plotting.

Usage

as_seqs(x, ...)
# S3 method for tbl_df
as_seqs(x, everything = TRUE, ...)

Value

an tbl_df with plot coordinates

Arguments

x

an object convertible to a sequence layout

...

pass through to layout_seqs()

everything

set to FALSE to drop optional columns

Methods (by class)

• as_seqs(tbl_df): Convert a list of tibbles into a seq layout

Details

Obligatory columns are seq_id, bin_id and length.

Examples

chr <- tibble::tibble(
  seq_id = c("a1", "b1", "b2"),
  bin_id = c(rep("A", 1), rep("B", 2)),
  length = c(5000, 3000, 1400)
)

as_seqs(chr)