as_feats

Read feat data such as genes into a tidy dataframe and augment it with
layout information based on a sequence layout.

internal

An extension of 'ggplot2' for creating complex genomic
maps. It builds on the power of 'ggplot2' and 'tidyverse' adding new 'ggplot2'-style
geoms & positions and 'dplyr'-style verbs to manipulate the underlying data. It
implements a layout concept inspired by 'ggraph' and introduces tracks to bring
tidiness to the mess that is genomics data.

Thomas Hackl

gggenomes

A Grammar of Graphics for Comparative Genomics

Markus J. Ankenbrand

Bart van Adrichem

Kristina Haslinger

as_feats function

<dl><dt>x</dt>
<dd>feat data convertible to a feat layout</dd>
<dt>seqs</dt>
<dd>the sequence layout the feat map onto.</dd>
<dt>...</dt>
<dd>passed on to <code>layout_seqs()</code></dd>
<dt>everything</dt>
<dd>set to FALSE to drop optional columns</dd></dl>

Arguments

Compute a layout for feat data — as_feats

<dl>

<dt>x</dt>
<dd>feat data convertible to a feat layout</dd>


<dt>seqs</dt>
<dd>the sequence layout the feat map onto.</dd>


<dt>...</dt>
<dd>passed on to <code>layout_seqs()</code></dd>


<dt>everything</dt>
<dd>set to FALSE to drop optional columns</dd>

</dl>

as_feats: Compute a layout for feat data

Description

Usage

Value

Arguments

Details