get_consensus

sequence alignment with data frame, generated by tidy_msa().

tidy

a logical value. When selected TRUE, gaps in column are treated as if that row didn't exist.

ignore_gaps

a character string. Specifying the reference sequence which should be one of input sequences when 'consensus_views' is TRUE.

Supports visualizing multiple sequence alignment of DNA and protein sequences using 'ggplot2'. It supports a number of colour schemes, including Chemistry, Clustal, Shapely, Taylor and Zappo. Multiple sequence alignment can easily be combined with other 'ggplot2' plots, such as aligning a phylogenetic tree produced by 'ggtree' with multiple sequence alignment.

Guangchuang Yu

get_consensus: calling the consensus sequence.

Description

Usage

Arguments