tidy_color

a data frame, sequence alignment with specified color.

the consensus sequence which can be called by get_consensus().

consensus

a logical value. Displays characters that disagreememt to consensus(excludes ambiguous disagreements).

disagreement

a character string. Specifying the reference sequence which should be one of input sequences when 'consensus_views' is TRUE.

cleaning the needless sequeces' color according to the consensus sequcence (only used in the consensus views).

Supports visualizing multiple sequence alignment of DNA and protein sequences using 'ggplot2'. It supports a number of colour schemes, including Chemistry, Clustal, Shapely, Taylor and Zappo. Multiple sequence alignment can easily be combined with other 'ggplot2' plots, such as aligning a phylogenetic tree produced by 'ggtree' with multiple sequence alignment.

tidy_color: cleaning the needless sequeces' color according to the consensus sequcence (only used in the consensus views).

Description

Usage

Arguments