tidy_msa

multiple sequence alignment file or sequence object in DNAStringSet, RNAStringSet, AAStringSet, BStringSet, DNAMultipleAlignment, RNAMultipleAlignment, AAMultipleAlignment, DNAbin or AAbin

start position to extract subset of alignment

start

end position to extract subset of alignemnt

Convert msa file/object to tidy data frame.

Supports visualizing multiple sequence alignment of DNA and protein sequences using 'ggplot2'. It supports a number of colour schemes, including Chemistry, Clustal, Shapely, Taylor and Zappo. Multiple sequence alignment can easily be combined with other 'ggplot2' plots, such as aligning a phylogenetic tree produced by 'ggtree' with multiple sequence alignment.

Guangchuang Yu

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tidy_msa: tidy_msa

Description

Usage

Arguments

Value